
So as penance I've now tracked down the source of the weird class loading bug I highlighted and have submitted a detailed bug report, including a proposed fix, to the IcedTea netx project (netx is the name of the open-source Web Start replacement). You can monitor the progress of the bug through their public bug tracker. If I had the right permissions it's such a simple fix that I'd be happy to do it myself, but you have to earn the respect of project maintainers before getting the right to commit code.
Update, 23th February: it's now been fixed in the main code tree although it will take a while before it makes it into an Ubuntu update.
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